External tools
WebApollo
WebApollo is a browser-based tool for visualization and editing of sequence annotations. It is designed for distributed community annotation efforts, where numerous people may be working on the same sequences in geographically different locations; real-time updating keeps all users in sync during the editing process.
Eco-Galaxy
Galaxy is an open, web-based platform for data intensive biomedical research. This instance runs of an ITB internal server. You can perform, reproduce, and share complete analyses.
Augustus
Repeat-Masker
RepeatMasker screens DNA sequences in FASTA format against the Repbase-derived RepeatMasker library of repetitive elements or against the Dfam database and returns a masked query sequence ready for database searches. RepeatMasker also generates a table annotating the masked regions.