Analyzing metabolite-to-genes co-expression

Use this tool to detect potential co-regulated genes based on their co-expression to metabolites. Additional important information is provided for found genes - highest expressed tissues, tissues specificity and time of the most recent duplication event.

The gene expression similarity is calculated among 20 tissues, including different leaves, roots, flowers and seeds tissues. As a measurement for gene expression similarity it can be chosen among the Gini correlation coefficient (GSS) [Ma et al], Pearson and Spearman correlation. The tissues specificity is calculated with two approaches: Shannon entropy [Gerstberger et al] and Tau.

Read more... about the used data sets.

Network parameters: